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4. Reagent gas ions are ejected. (D)
5. The CI mass spectrum is acquired for the sample ions. (E)
SECI ejects all ions above a cutoff mass by applying a waveform between the
ionization and reaction periods. This is the preferred mode of operation on the
Saturn GC/MS, since all EI artifact ions are eliminated. It should be noted that
fragmentation can still be observed in CI spectra due to energy imparted when
the proton is transferred from the reagent ion to the sample molecule.
Ion Formation By Chemical Ionization
In CI, ionization of sample molecules is a two-step process. In the first step,
reagent gas ions are formed as the reagent gas is ionized by interaction with
electrons emitted by the filament.
In the second step, the reagent gas ions react with sample molecules in the ion
trap to form sample ions. There are four principal reactions between reagent gas
ions and sample molecules. They are:
(A) Proton transfer: (RH)
+
+ M (MH)
+
+ R
(B) Hydride abstraction: R
+
+ M [M-H]
+
+ RH
(C) Association: R
+
+ M (MR)
+
(D) Charge transfer: R
+
+ M M
+
+ R
where R
+
is the secondary reagent gas ion and M is the neutral sample
molecule.
For methane CI, proton transfer (A) is the major reaction, and hydride abstraction
(B) is the next most often observed reaction. In both cases the resulting even-
electron ions are often relatively stable, and the observation of strong (M+1) or
(M-1) ions is possible even if the EI spectrum of the same component shows no
molecular ion. The exothermicity of the reactions determines the amount of
energy deposited; therefore, the degree of fragmentation can be controlled by
the choice of a suitable CI reagent gas. The proton affinities of some common
reagent gases of this type, known as proton transfer agents or Bronsted acids,
range from 130 kcal/mol to 200 kcal/mol in the following order: methane, water,
isobutane, and ammonia (with ammonia resulting in the “softest” ionization). By
choosing a suitable reagent gas, you can obtain high specificity (i.e., less
efficient detection of background or matrix interferences compared to the
analyte) as well as molecular weight information for the compounds of interest.
The association or clustering reactions (C) typically have very low reaction rates,
and the reaction products require rapid collisional stabilization. They are typically
seen on the Saturn GC/MS at much lower abundance then the (M+1) ion, but
when (M+28) and (M+41) ions are observed using methane, they are useful for
verifying the molecular weight.
The charge transfer reaction (D) produces a radical molecular ion (i.e., an ion
with an odd number of electrons) that dissociates quickly, giving EI-like spectra.
However, the energy deposited in the molecular ion and the resulting
fragmentation pattern does not depend on the electron energy of the ionizing
electrons. Common charge-transfer reagent gases are nitrogen and argon.
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