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In CI, as in EI, the Saturn GC/MS is tuned to achieve the best combination of
maximum peak height (sensitivity), optimum resolution of peaks, and smooth
peak shape. And in CI, as in EI, the key to proper tuning is to optimize the
number of ions in the ion trap: Too few ions, sensitivity suffers; too many ions,
resolution and peak shape suffer.
In CI, the two main factors that affect the number of ions in the ion trap are the
ionization time and the reaction time. (Once again, the emission current is an
important third factor.)
The CI ionization time is the time that energetic electrons, emitted from the
filament, are allowed to interact with reagent gas to form reagent ions. The
reaction time is the time that reagent gas ions are allowed to react with sample
molecules to form ions.
To a first approximation, the number of reagent ions formed is directly
proportional to the ionization time, and the number of sample ions formed is
directly proportional to the reaction time.
Once you have selected methane as the CI reagent gas it is time to adjust the
flow rate of the gas into the mass spectrometer. Make sure that the gas tank is
open and connected to the back of the instrument. Select the adjust button. This
will open the CI valves, turn on the filament and multiplier. You will see the
screen below. This is an example of the CI gas spectrum for methane, when the
CI gas pressure is too low and needs to be increased. Notice the resolution and
relative ratio between masses 10 and 30.
See the Chemical Ionization
section in the Hardware Manual for setup and CI gas adjustment.
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